rogue_gene_removal
Materials for identification of genes that are highly unlikely to have evolved under a model of duplication and loss
PythonUpdated 3/24/2025
PanForest
Pangenome analysis using random forests
PythonUpdated 3/11/2025
RF_plasmids
Tools used for assessing plasmids for synthetic evolution experiment
HTMLUpdated 2/18/2025
mcmctree_proteins
materials and manual (loosely defined) to run mcmctree for divergence time estimation with protein data
PythonUpdated 11/29/2024
ribocode
specialised ribosome stuff
PythonUpdated 7/23/2024