rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
NextflowUpdated 4/4/2025
nextflow
A DSL for data-driven computational pipelines
GroovyUpdated 3/4/2025
training
Nextflow training material
Updated 11/26/2024
fastapi-utils
Reusable utilities for FastAPI
Updated 11/7/2024
Bismark
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
HTMLUpdated 9/6/2024